spectrochempy.read_srs¶
- read_srs(*paths, **kwargs)[source]¶
Open a Thermo Nicolet file or a list of files with extension
.srs
.Open Omnic file or a list of files with extension
.srs
and set data/metadata in the current dataset.- Parameters
*paths (str, pathlib.Path object, list of str, or list of pathlib.Path objects, optional) – The data source(s) can be specified by the name or a list of name for the file(s) to be loaded:
e.g.,( file1, file2, …, **kwargs )
If the list of filenames are enclosed into brackets:
e.g., ( [ file1, file2, … ], **kwargs )
The returned datasets are merged to form a single dataset, except if
merge
is set to False. If a source is not provided (i.e. nofilename
, norcontent
), a dialog box will be opened to select files.**kwargs – Optional keyword parameters (see Other Parameters).
- Returns
NDDataset – The dataset or a list of dataset corresponding to a (set of) series or backgroun files.
- Other Parameters
return_bg (bool, optional) – Default value is False. When set to ‘True’ returns the series background
directory (str, optional) – From where to read the specified
filename
. If not specified, read in the defaultdatadir
specified in SpectroChemPy Preferences.merge (bool, optional) – Default value is False. If True, and several filenames have been provided as arguments, then a single dataset with merged (stacked along the first dimension) is returned (default=False).
sortbydate (bool, optional) – Sort multiple spectra by acquisition date (default=True).
description (str, optional) – A Custom description.
content (bytes object, optional) – Instead of passing a filename for further reading, a bytes content can be directly provided as bytes objects. The most convenient way is to use a dictionary. This feature is particularly useful for a GUI Dash application to handle drag and drop of files into a Browser. For examples on how to use this feature, one can look in the
tests/tests_readers
directory.listdir (bool, optional) – If True and filename is None, all files present in the provided
directory
are returned (and merged ifmerge
is True. It is assumed that all the files correspond to current reading protocol (default=True)recursive (bool, optional) – Read also in subfolders. (default=False).
See also
read
Generic read method.
read_topspin
Read TopSpin Bruker NMR spectra.
read_omnic
Read Omnic spectra.
read_opus
Read OPUS spectra.
read_labspec
Read Raman LABSPEC spectra.
read_spg
Read Omnic *.spg grouped spectra.
read_spa
Read Omnic *.Spa single spectra.
read_csv
Read CSV files.
read_zip
Read Zip files.
read_matlab
Read Matlab files.
Notes
This method is an alias of
read_omnic
, except that the type of file is constrained to *.srs.Examples
>>> scp.read_srs('irdata/omnic_series/rapid_scan_reprocessed.srs') NDDataset: [float64] a.u. (shape: (y:643, x:3734))